Package: doremi 1.0.0

Mongin Denis

doremi: Dynamics of Return to Equilibrium During Multiple Inputs

Provides models to fit the dynamics of a regulated system experiencing exogenous inputs. The underlying models use differential equations and linear mixed-effects regressions to estimate the coefficients of the equation. With them, the functions can provide an estimated signal. The package provides simulation and analysis functions and also print, summary, plot and predict methods, adapted to the function outputs, for easy implementation and presentation of results.

Authors:Mongin Denis [aut, cre], Uribe Adriana [aut], Courvoisier Delphine [aut]

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doremi.pdf |doremi.html
doremi/json (API)
NEWS

# Install 'doremi' in R:
install.packages('doremi', repos = c('https://dcourvoisier.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dcourvoisier/doremi/issues

Datasets:
  • cardio - Measurements of cardiac frequency in 21 patients during effort tests
  • rotation - Measurements of response time of 17 individuals when carrying out mental rotation tasks

On CRAN:

4.48 score 1 packages 25 scripts 236 downloads 1 mentions 11 exports 44 dependencies

Last updated 3 years agofrom:f2adc5037f. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winNOTEOct 25 2024
R-4.5-linuxNOTEOct 25 2024
R-4.4-winNOTEOct 25 2024
R-4.4-macNOTEOct 25 2024
R-4.3-winNOTEOct 25 2024
R-4.3-macNOTEOct 25 2024

Exports:analyze.1orderanalyze.2ordercalculate.fdacalculate.gllacalculate.goldgenerate.1ordergenerate.2ordergenerate.excitationgenerate.panel.1ordergenerate.panel.2orderoptimum_param

Dependencies:bootclicolorspacedata.tabledeSolvefansifarverformatRfutile.loggerfutile.optionsggplot2gluegridExtragtableisobandlabelinglambda.rlatticelifecyclelme4lmerTestmagrittrMASSMatrixmgcvminqamunsellnlmenloptrnumDerivpillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalestibbleutf8vctrsviridisLitewithrzoo

derivatives

Rendered fromderivatives.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-01-07
Started: 2021-01-05

first-order

Rendered fromfirst-order.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-01-07
Started: 2020-02-06

Introduction-to-doremi

Rendered fromIntroduction-to-doremi.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-01-07
Started: 2018-06-11

second-order

Rendered fromsecond-order.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-01-07
Started: 2020-02-06

Readme and manuals

Help Manual

Help pageTopics
DOREMI first order analysis functionanalyze.1order
DOREMI second order analysis functionanalyze.2order
Calculation of derivatives using the Functional Data Analysis (FDA) method.calculate.fda
Calculation of derivatives using the GLLA methodcalculate.glla
Calculation of derivatives using the GOLD methodcalculate.gold
Measurements of cardiac frequency in 21 patients during effort testscardio
Displays error messages for the analysis function according to the nature of the error 'errorcheck' displays error messages and/or warnings concerning the validity of input arguments provided to the analysis functionerrorcheck
Generation of the first order differential equation solution with deSolve, for given fixed coefficients and initial conditiongenerate.1order
Generation of the second order differential equation solution with deSolvegenerate.2order
Excitation signal generationgenerate.excitation
Generation of first order differential equation solutions for several individuals with intra-individual and inter-individual noisegenerate.panel.1order
Generation of second order differential equation solutions for several individuals with intra-individual and inter-individual noisegenerate.panel.2order
Function to find the optimum parameter for derivative estimation (embedding or spar according to derivative estimation method chosen)optimum_param
S3 method to plot DOREMI objectsplot.doremi
S3 method to plot DOREMIDATA objectsplot.doremidata
S3 method to plot DOREMIPARAM objectsplot.doremiparam
S3 method to predict signal values in a DOREMI object when entering a new excitationpredict.doremi
S3 method to print DOREMI objectsprint.doremi
S3 method to print DOREMIDATA objectsprint.doremidata
Measurements of response time of 17 individuals when carrying out mental rotation tasksrotation
S3 method for DOREMI object summarysummary.doremi